CEN.PK array 1		CEN.PK array 2		S288C		CEN.PK array 1 vs array 2		CEN.PK array 1 vs S288C		CEN.PK array 2 vs S288C	
Probe Set	Gene name	Gene function	Avg Diff	Abs Call	Avg Diff	Abs Call	Avg Diff	Abs Call	Diff Call	Fold Change	Diff Call	Fold Change	Diff Call	Fold Change

3977_i_at	Q0320	similarity to honeybee mitochondrion NADH dehydrogenase chain 6 (SGC4) Found reverse in NC_001224 between 48858 and 49169 with 99,679487% identity,	24929,6	P	31280,7	P	14481,8	P	NC	-1,3	I	1,7	I	2,2
3183_f_at	YIL177C	YIL177C strong similarity to subtelomeric encoded proteins	31599	P	40528,4	P	18412,3	P	NC	-1,3	I	1,7	I	2,2
3148_s_at	YCR096C	YCR096C mating hormone a2	3298,8	P	4146	P	1941,1	P	NC	-1,2	I	1,8	I	2,1
6153_at	YDR322W	YDR322W Mitochondrial ribosomal protein MRPL35 (YmL35)	1045,4	P	1385,9	P	582,8	P	NC	-1,3	I	1,8	I	2,4
3737_s_at	YLR467W	YLR467W strong similarity to subtelomeric encoded proteins	17097,4	P	21590,8	P	9747,7	P	NC	-1,2	I	1,8	I	2
11248_s_at	YJL225C	YJL225C strong similarity to members of the Sir1p/Tip1p family	36076,4	P	43770,1	P	18212,7	P	NC	-1,2	I	1,9	I	2,3
9866_i_at	YLR465C	YLR465C questionable ORF	8263,2	P	11184,3	P	4322,3	P	NC	-1,4	I	1,9	I	2,6
3542_f_at	YPR204W	YPR204W strong similarity to subtelomeric encoded proteins	35212,9	P	43615,4	P	18354,6	P	NC	-1,2	I	1,9	I	2,4
4008_at	Q0185	cytochrome-c oxidase subunit I Found forward in NC_001224 between 26627 and 26701 with 100% identity,	10979	P	12026,7	P	5485,1	P	NC	-1,1	I	2	I	2,2
4359_at	YHR154W	YHR154W Establishes Silent omatin	743,7	P	935,8	P	368,3	P	NC	-1,3	I	2	I	2,5
9510_at	YMR114C	YMR114C similarity to B, subtilis conserved hypothetical proteins yoqW and yoaM	1977	P	1989,5	P	982,9	P	NC	-1	I	2	I	2
3975_at	Q0280	ubiquinol--cytochrome-c reductase subunit (cytochrome B) Found forward in NC_001224 between 43297 and 43647 with 100% identity,	3592,7	P	1656,6	P	1250,8	P	NC	-1,1	I	2,1	I	1,8
9413_f_at	YMR230W	YMR230W Ribosomal protein S10B	1846	P	1835,7	P	948,7	P	NC	1,1	I	2,1	I	1,9
3996_s_at	Q0185	cytochrome-c oxidase subunit I Found forward in NC_001224 between 13818 and 13988 with 100% identity,	15118,7	P	18767,7	P	6821,9	P	NC	-1,2	I	2,2	I	2,8
3966_i_at	Q0270	similarity to  T,brucei mitochondrion protein SGC6 Found reverse in NC_001224 between 34032 and 34430 with 88,279302% identity,	10397,4	P	12031,6	P	4711,3	P	NC	-1,2	I	2,2	I	2,6
3976_at	Q0310	F1F0-ATPase complex, F0 subunit 9 Found forward in NC_001224 between 46723 and 46953 with 100% identity,	7125,3	P	8277	P	2910,9	P	NC	-1,2	I	2,2	I	2,6
5597_at	YER112W	YER112W U6 snRNA associated protein	1707	P	1676,3	P	781,4	P	NC	1	I	2,2	I	2,1
5155_at	YGL133W	YGL133W similarity to hypothetical protein YPL216w	2075,4	P	1841,4	P	941,5	P	NC	1,1	I	2,2	I	2
4925_at	YGR089W	YGR089W weak similarity to rat tropomyosin	1103,7	P	1049,1	P	497,9	P	NC	1,1	I	2,2	I	2,1
8611_at	YOL041C	YOL041C weak similarity to M,sativa nuM1, hnRNP protein from C, tentans and D, melanogaster, murine/bovine poly(A) binding protein II, and Nsr1p	1516,3	P	1437,8	P	617,9	P	NC	1,1	I	2,3	I	2,1
3983_at	Q0085	Q0085 cytochrome-c oxidase subunit II	7144,5	P	9603,3	P	3035,8	P	NC	-1,3	I	2,4	I	3,2
3994_at	Q0155	similarity to Sauroleishmania NADH dehydrogenase (ubiquinone) chain 5 Found forward in NC_001224 between 3940 and 4167 with 99,122807% identity,	10666,2	P	13451,1	P	4520,9	P	NC	-1,3	I	2,4	I	3
3978_r_at	Q0320	similarity to honeybee mitochondrion NADH dehydrogenase chain 6 (SGC4) Found reverse in NC_001224 between 48858 and 49169 with 99,679487% identity,	2499,3	P	2812	P	759,1	P	NC	-1,1	I	2,5	I	2,7
4006_at	Q0210	COX1 intron protein aI5-beta Found forward in NC_001224 between 24120 and 25151 with 96,317829% identity,	6638,2	P	5501,6	P	2400,3	P	NC	1,2	I	2,8	I	2,3
4361_at	YHR156C	YHR156C weak similarity to mouse kinesin KIF3B	1156,2	P	1025,1	P	401,2	P	NC	1,1	I	2,9	I	2,6
3981_at	Q0350	probable mRNA maturase in 21S rRNA intron Found forward in NC_001224 between 61193 and 61729 with 100% identity,	7412,4	P	7964,1	P	2298,2	P	NC	-1,1	I	3,2	I	3,5
3470_i_at	YDL248W	YDL248W Protein with strong similarity to other subtelomerically-encoded proteins such as Cos5p, Ybr302p, Cos3p, Cos1p, Cos4p, Cos8p, Cos6p, Cos9p	3048,1	P	2379,8	P	889,1	P	NC	1,3	I	3,4	I	2,7
6792_s_at	YCR097W	YCR097W Homeobox-domain containing protein which, together with alpha2, represses transcription of haploid-specific genes in diploid cells	2241	P	2044,9	P	616,8	P	NC	1,1	I	3,6	I	3,3
3962_f_at	Q0242	endonuclease SCEI, small subunit Found forward in NC_001224 between 8238 and 8509 with 72,463768% identity,	16111,8	P	15213,6	P	2897,9	P	NC	1,1	I	5,6	I	5,2